For one thing, it takes more time/agitation than some people allow for the salt to become thoroughly dissolved. If you mixed the salt the way you normally do and just left it standing in a bucket, you might be surprised to find salt settling on the bottom of the bucket. If the salt is not properly dissolved it burns the fish and coral tissue. Also, the specific gravity varies depending on temp. the colder the water, the more dense it will be, and since we use specific gravity to measure salinity, the temp needs to match the tank to get an accurate reading. Finally, aeration is vital, because standing water will have much higher CO2 levels. When oxygen dissolves into water, it forces the release of other dissolved gasses in the water, namely CO2. If you are dumping in water that has not been aerated, even if the temp and salinity match, you are throwing off the chemistry of the tank, because everything has to adjust to the new oxygen levels in the water. I think this is probably the least likely to cause trouble for you, but it is the science you requested. :D