+1 sen. That's why I don't understand, if you were already having problems with your sand, why did you switch it out for a deeper sandbed? You said your new sand was about 3 inches deep. That's the worst depth you can have. Anything between 1 inch and 6 inches is not deep enough to carry out nitrogen conversion as a deep sand bed, and is just a bad detritus and gas trap.
If your sand bed was 1 inch deep before, and already having problems, the last thing you want to do is make it deeper.